PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C023341P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

DBB

Protein Properties

Length: 179aa MW: 19442.1 Da PI: 7.3388

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C023341P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.8	2.5e-09	3	43	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +C+ ++++e++ fC +++ lC+ C + H+ H+ MELO3C023341P1 3 IRCDVCDKEEASVFCPSDEAALCPACDRQVHRAnklaskHS 43 58*****************************7666666665 PP
2	zf-B_box	23.8	9.5e-08	59	96	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++ C+ ++ +++ lfC++++ lC++C +H Ht MELO3C023341P1 59 QPLCDVCQIQRAFLFCREDRAILCRECDIPIHDTseHT 96 789****************************9546765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.751	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.1E-7	3	44	IPR000315	B-box-type zinc finger
CDD	cd00021	2.17E-6	3	47	No hit	No description
SMART	SM00336	2.3E-9	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.253	57	104	IPR000315	B-box-type zinc finger
SMART	SM00336	2.7E-11	57	104	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.1E-6	59	99	IPR000315	B-box-type zinc finger
CDD	cd00021	1.39E-6	60	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MKIRCDVCDK EEASVFCPSD EAALCPACDR QVHRANKLAS KHSRFSLLHS AASAAATSQP 60 LCDVCQIQRA FLFCREDRAI LCRECDIPIH DTSEHTQKHS RFLLTGVKVS PSTATSSSCS 120 SSVGSGGEEN EGLLKKCSRK RSKMGFSKGL VISEYLESLP GWCVEDFLDS SSSPHILL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681912	0.0	LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008461001.1	1e-127	PREDICTED: probable salt tolerance-like protein At1g75540
Swissprot	Q9LQZ7	4e-56	BBX21_ARATH; B-box zinc finger protein 21
TrEMBL	A0A0A0LIV6	6e-97	A0A0A0LIV6_CUCSA; Uncharacterized protein
STRING	POPTR_0002s02970.1	9e-60	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1448	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	1e-52	salt tolerance homolog2