PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023341P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family DBB
Protein Properties Length: 179aa    MW: 19442.1 Da    PI: 7.3388
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023341P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.82.5e-09343438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     +C+ ++++e++ fC +++  lC+ C  + H+       H+
  MELO3C023341P1  3 IRCDVCDKEEASVFCPSDEAALCPACDRQVHRAnklaskHS 43
                    58*****************************7666666665 PP

2zf-B_box23.89.5e-085996338
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                    ++ C+ ++ +++ lfC++++  lC++C   +H    Ht
  MELO3C023341P1 59 QPLCDVCQIQRAFLFCREDRAILCRECDIPIHDTseHT 96
                    789****************************9546765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.751147IPR000315B-box-type zinc finger
PfamPF006431.1E-7344IPR000315B-box-type zinc finger
CDDcd000212.17E-6347No hitNo description
SMARTSM003362.3E-9447IPR000315B-box-type zinc finger
PROSITE profilePS5011910.25357104IPR000315B-box-type zinc finger
SMARTSM003362.7E-1157104IPR000315B-box-type zinc finger
PfamPF006432.1E-65999IPR000315B-box-type zinc finger
CDDcd000211.39E-660104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MKIRCDVCDK EEASVFCPSD EAALCPACDR QVHRANKLAS KHSRFSLLHS AASAAATSQP  60
LCDVCQIQRA FLFCREDRAI LCRECDIPIH DTSEHTQKHS RFLLTGVKVS PSTATSSSCS  120
SSVGSGGEEN EGLLKKCSRK RSKMGFSKGL VISEYLESLP GWCVEDFLDS SSSPHILL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819120.0LN681912.1 Cucumis melo genomic scaffold, anchoredscaffold00059.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461001.11e-127PREDICTED: probable salt tolerance-like protein At1g75540
SwissprotQ9LQZ74e-56BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A0A0LIV66e-97A0A0A0LIV6_CUCSA; Uncharacterized protein
STRINGPOPTR_0002s02970.19e-60(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.11e-52salt tolerance homolog2